![]() ![]() Please cite the following manuscript when you use CytoCluster: An algorithm for identifying protein complexes based on maximal clique extension. IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), 2014, 11(3): 486-497.Ħ. Detecting protein complexes based on uncertain graph model. Detecting overlapping protein complexes in protein-protein interaction networks. Modifying the DPClus algorithm for identifying protein complexes based on new topological structures. Identification of Hierarchical and Overlapping Functional Modules in PPI Networks. Computational Biology and Bioinformatics, IEEE/ACM Transactions on, 2011, 8(3): 607-620.Ģ. A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks. Results can be sorted by score or size or modularity.ġ. You can check the attributes of the selected cluster or export the results if you like. After analysis is done, results will be shown in right panel. It will switch to CytoCluster tab on left panel, choose the clustering algorithm and keep all parameters as default or you can customize the parameters as you want.Ħ. Click App → CytoCluster → Start CytoCluster.Ĥ. Start Cytoscape, install the CytoCluster.jar through App Manager(Apps → App Manager → Install from file.)ģ. Min Li and Dr.Jiancheng Zhong from Central South University.įollowing is a short quick start for the usage of CytoCluster, detailed information of the algorithms implemented in this plug-in can be found in related papers.ġ. This app is developed by Yu Tang and Dongyan Li directed by Dr. Three different graph clustering algorithms (HC-PIN, OH-PIN, IPCA, ClusterONE, DCU, IPC-MCE, ) and BinGO were implemented in CytoCluster. CytoCluster is a Cytoscape app for analysis and visualization of clusters from network, and has been tested on Cytoscape 3.0.X.ĬytoCluster is a Cytoscape app for analysis and visualization of clusters from network. ![]()
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